Index

B

bin_radii() (mdakithole2.analysis.HoleAnalysis method)

C

check_and_fix_long_filename() (in module mdakithole2.analysis.utils) collect_hole() (in module mdakithole2.analysis.utils)

create_vmd_surface() (in module mdakithole2.analysis.utils) (mdakithole2.analysis.HoleAnalysis method)

D

delete_temporary_files() (mdakithole2.analysis.HoleAnalysis method)

E

environment variable PATH, [1]

G

gather() (mdakithole2.analysis.HoleAnalysis method)

guess_cpoint() (mdakithole2.analysis.HoleAnalysis method)

H

histogram_radii() (mdakithole2.analysis.HoleAnalysis method)

hole() (in module mdakithole2.analysis) HoleAnalysis (class in mdakithole2.analysis)

M

mdakithole2.analysis module mdakithole2.analysis.templates module mdakithole2.analysis.utils module

min_radius() (mdakithole2.analysis.HoleAnalysis method) module mdakithole2.analysis mdakithole2.analysis.templates mdakithole2.analysis.utils

O

over_order_parameters() (mdakithole2.analysis.HoleAnalysis method)

P

PATH, [1] plot() (mdakithole2.analysis.HoleAnalysis method) plot3D() (mdakithole2.analysis.HoleAnalysis method)

plot3D_order_parameters() (mdakithole2.analysis.HoleAnalysis method) plot_mean_profile() (mdakithole2.analysis.HoleAnalysis method) plot_order_parameters() (mdakithole2.analysis.HoleAnalysis method)

R

run() (mdakithole2.analysis.HoleAnalysis method)

run_hole() (in module mdakithole2.analysis.utils)

S

SIMPLE2_RAD (in module mdakithole2.analysis.templates)

W

write_simplerad2() (in module mdakithole2.analysis.utils)